GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| UCEC | cis | rs1577917 | 1 | rs34281561 | chr6:86701872 | SNHG5 | chr6:86386726-86388451:- | -0.45 | -5.39 | 2.62E-7 | Response to antipsychotic treatment |
| UCEC | cis | rs1577917 | 1 | rs34581302 | chr6:86705948 | SNHG5 | chr6:86386726-86388451:- | -0.46 | -5.38 | 2.72E-7 | Response to antipsychotic treatment |
| UCEC | cis | rs1577917 | 1 | rs34622557 | chr6:86630852 | SNHG5 | chr6:86386726-86388451:- | -0.45 | -5.37 | 2.92E-7 | Response to antipsychotic treatment |
| UCEC | cis | rs950169 | 1 | rs34751999 | chr15:84758419 | LOC388152 | chr15:84867600-84898920:- | -0.47 | -4.83 | 3.25E-6 | Schizophrenia |
| UCEC | cis | rs1577917 | 1 | rs34852683 | chr6:86702330 | SNHG5 | chr6:86386726-86388451:- | -0.45 | -5.37 | 2.92E-7 | Response to antipsychotic treatment |
| UCEC | cis | rs4237643 | 1 | rs35060985 | chr11:43693110 | HSD17B12 | chr11:43702143-43878160:+ | -0.38 | -4.63 | 7.74E-6 | Forced vital capacity |
| UCEC | cis | rs950169 | 1 | rs35297609 | chr15:84772896 | LOC388152 | chr15:84867600-84898920:- | -0.47 | -4.83 | 3.25E-6 | Schizophrenia |
| UCEC | cis | rs1577917 | 1 | rs35385043 | chr6:86648546 | SNHG5 | chr6:86386726-86388451:- | -0.46 | -5.99 | 1.45E-8 | Response to antipsychotic treatment |
| UCEC | cis | rs1577917 | 1 | rs35419329 | chr6:86702291 | SNHG5 | chr6:86386726-86388451:- | -0.45 | -5.39 | 2.62E-7 | Response to antipsychotic treatment |
| UCEC | cis | rs9894429 | 1 | rs35435780 | chr17:79579602 | TSPAN10 | chr17:79609349-79615778:+ | 0.66 | 8.57 | 1.11E-14 | Eye color traits |
| UCEC | cis | rs950169 | 1 | rs35648189 | chr15:84740748 | LOC388152 | chr15:84867600-84898920:- | -0.47 | -4.81 | 3.63E-6 | Schizophrenia |
| UCEC | cis | rs950169 | 1 | rs35658069 | chr15:84780146 | LOC388152 | chr15:84867600-84898920:- | -0.47 | -4.83 | 3.25E-6 | Schizophrenia |
| UCEC | cis | rs1577917 | 1 | rs35760725 | chr6:86648985 | SNHG5 | chr6:86386726-86388451:- | -0.46 | -5.99 | 1.45E-8 | Response to antipsychotic treatment |
| UCEC | cis | rs1577917 | 1 | rs35761942 | chr6:86629504 | SNHG5 | chr6:86386726-86388451:- | -0.53 | -5.8 | 3.64E-8 | Response to antipsychotic treatment |
| UCEC | cis | rs1577917 | 1 | rs35797755 | chr6:86706554 | SNHG5 | chr6:86386726-86388451:- | -0.46 | -5.46 | 1.87E-7 | Response to antipsychotic treatment |